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apobec enzyme  (New England Biolabs)


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    Structured Review

    New England Biolabs apobec enzyme
    Apobec Enzyme, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 448 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/apobec+enzyme/NEBNext+Enzymatic+Methyl/pmc12982718-270-11-13
    Average 99 stars, based on 448 article reviews
    apobec enzyme - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Purification:

    Article Title: 5-Hydroxymethylcytosine Dynamics Reveals Coordinated Reprogramming of Parental Genomes and X Chromosome Dosage Balance in Mouse SCNT Embryos.
    Article Snippet: The purified gDNA was subjected to glucosylation by incubation with UDP-glucose and T4 Phage β-glucosyltransferase (New England Biolabs, Cat#A63882) at 37 °C for 1 h. Following glycosylation, the DNA was purified again with AMPure XP beads to remove residual enzymes and unincorporated nucleotides. .. Next, the DNA was denatured by adding 0.1 M NaOH and incubating at 55 °C for 10 min. Deamination was carried out using the APOBEC enzyme (New England Biolabs, CatE7125L) at 37 °C for 3 h. After deamination, the DNA was purified once more with AMPure XP beads before proceeding to library construction. ..

    Article Title: 5‐Hydroxymethylcytosine Dynamics Reveals Coordinated Reprogramming of Parental Genomes and X Chromosome Dosage Balance in Mouse SCNT Embryos
    Article Snippet: The purified gDNA was subjected to glucosylation by incubation with UDP‐glucose and T4 Phage β‐glucosyltransferase (New England Biolabs, Cat#A63882) at 37 °C for 1 h. Following glycosylation, the DNA was purified again with AMPure XP beads to remove residual enzymes and unincorporated nucleotides. .. Next, the DNA was denatured by adding 0.1 M NaOH and incubating at 55 °C for 10 min. Deamination was carried out using the APOBEC enzyme (New England Biolabs, CatE7125L) at 37 °C for 3 h. After deamination, the DNA was purified once more with AMPure XP beads before proceeding to library construction. ..

    Article Title: Distinct dynamics of parental 5-hydroxymethylcytosine during human preimplantation development regulate early lineage gene expression.
    Article Snippet: In brief, fragmented gDNA was glycosylated by using UDP-glucose and T4 Phage β-glucosyltransferase (New England Biolabs, cat. no. M0357) at 37 °C for 1 h. Afterwards, 0.1 M NaOH was added for denaturation at 55 °C for 10 min. .. The APOBEC enzyme (New England Biolabs, cat. no. E7125) was used to deaminate gDNA at 37 °C for 3 h. After deamination, gDNA was purified once using AMPure XP beads (Beckman Coulter, cat. no. A63882) before library construction following the TAILS procedure18,22,47. .. A Fragment Analyzer (Agilent 5200) was used to check the size distribution of the final libraries.

    Article Title: Distinct dynamics of parental 5-hydroxymethylcytosine during human preimplantation development regulate early lineage gene expression
    Article Snippet: In brief, fragmented gDNA was glycosylated by using UDP-glucose and T4 Phage β-glucosyltransferase (New England Biolabs, cat. no. M0357) at 37 °C for 1 h. Afterwards, 0.1 M NaOH was added for denaturation at 55 °C for 10 min. .. The APOBEC enzyme (New England Biolabs, cat. no. E7125) was used to deaminate gDNA at 37 °C for 3 h. After deamination, gDNA was purified once using AMPure XP beads (Beckman Coulter, cat. no. A63882) before library construction following the TAILS procedure , , . .. A Fragment Analyzer (Agilent 5200) was used to check the size distribution of the final libraries.

    Article Title: Dynamics of DNA hydroxymethylation and methylation during mouse embryonic and germline development.
    Article Snippet: In mammals, DNA 5-hydroxymethylcytosine (5hmC) is involved in methylation reprogramming during early embryonic development.. Yet, to what extent 5hmC participates in genome-wide methylation reprogramming remains largely unknown.. Here, we characterize the 5hmC landscapes in mouse early embryos and germ cells with parental allele specificity.

    Article Title: Auto-suppression of Tet dioxygenases protects the mouse oocyte genome from oxidative demethylation.
    Article Snippet: DNA cytosine methylation plays a vital role in repressing retrotransposons, and such derepression is linked with developmental failure, tumorigenesis and aging.. DNA methylation patterns are formed by precisely regulated actions of DNA methylation writers (DNA methyltransferases) and erasers (TET, ten-eleven translocation dioxygenases).. However, the mechanisms underlying target-specific oxidation of 5mC by TET dioxygenases remain largely unexplored.

    Ligation:

    Article Title: Dynamics of DNA hydroxymethylation and methylation during mouse embryonic and germline development.
    Article Snippet: In mammals, DNA 5-hydroxymethylcytosine (5hmC) is involved in methylation reprogramming during early embryonic development.. Yet, to what extent 5hmC participates in genome-wide methylation reprogramming remains largely unknown.. Here, we characterize the 5hmC landscapes in mouse early embryos and germ cells with parental allele specificity.

    Modification:

    Article Title: Auto-suppression of Tet dioxygenases protects the mouse oocyte genome from oxidative demethylation.
    Article Snippet: DNA cytosine methylation plays a vital role in repressing retrotransposons, and such derepression is linked with developmental failure, tumorigenesis and aging.. DNA methylation patterns are formed by precisely regulated actions of DNA methylation writers (DNA methyltransferases) and erasers (TET, ten-eleven translocation dioxygenases).. However, the mechanisms underlying target-specific oxidation of 5mC by TET dioxygenases remain largely unexplored.

    Incubation:

    Article Title: Tet methylcytosine dioxygenase 2(TET2)-dependent epigenetic regulation in the pathogenesis of polycystic ovary syndrome
    Article Snippet: .. The denatured DNA was subjected to deamination by incubation with the APOBEC enzyme (NEB, #E7120S) from the Next Enzymatic Methyl-seq Kit at 37 °C for 3 h. The resulting DNA was then analyzed using a DNA methylation microarray, such as the Illumina Infinium MethylationEPIC BeadChip (850 K array), following the standard protocol provided by the manufacturer. ..

    Article Title: Tet methylcytosine dioxygenase 2(TET2)-dependent epigenetic regulation in the pathogenesis of polycystic ovary syndrome.
    Article Snippet: .. The denatured DNA was subjected to deamination by incubation with the APOBEC enzyme (NEB, #E7120S) from the Next Enzymatic Methyl-seq Kit at 37 °C for 3 h. The resulting DNA was then analyzed using a DNA methylation microarray, such as the Illumina Infinium MethylationEPIC BeadChip (850 K array), following the standard protocol provided by the manufacturer. ..

    DNA Methylation Assay:

    Article Title: Tet methylcytosine dioxygenase 2(TET2)-dependent epigenetic regulation in the pathogenesis of polycystic ovary syndrome
    Article Snippet: .. The denatured DNA was subjected to deamination by incubation with the APOBEC enzyme (NEB, #E7120S) from the Next Enzymatic Methyl-seq Kit at 37 °C for 3 h. The resulting DNA was then analyzed using a DNA methylation microarray, such as the Illumina Infinium MethylationEPIC BeadChip (850 K array), following the standard protocol provided by the manufacturer. ..

    Article Title: Tet methylcytosine dioxygenase 2(TET2)-dependent epigenetic regulation in the pathogenesis of polycystic ovary syndrome.
    Article Snippet: .. The denatured DNA was subjected to deamination by incubation with the APOBEC enzyme (NEB, #E7120S) from the Next Enzymatic Methyl-seq Kit at 37 °C for 3 h. The resulting DNA was then analyzed using a DNA methylation microarray, such as the Illumina Infinium MethylationEPIC BeadChip (850 K array), following the standard protocol provided by the manufacturer. ..

    Microarray:

    Article Title: Tet methylcytosine dioxygenase 2(TET2)-dependent epigenetic regulation in the pathogenesis of polycystic ovary syndrome
    Article Snippet: .. The denatured DNA was subjected to deamination by incubation with the APOBEC enzyme (NEB, #E7120S) from the Next Enzymatic Methyl-seq Kit at 37 °C for 3 h. The resulting DNA was then analyzed using a DNA methylation microarray, such as the Illumina Infinium MethylationEPIC BeadChip (850 K array), following the standard protocol provided by the manufacturer. ..

    Article Title: Tet methylcytosine dioxygenase 2(TET2)-dependent epigenetic regulation in the pathogenesis of polycystic ovary syndrome.
    Article Snippet: .. The denatured DNA was subjected to deamination by incubation with the APOBEC enzyme (NEB, #E7120S) from the Next Enzymatic Methyl-seq Kit at 37 °C for 3 h. The resulting DNA was then analyzed using a DNA methylation microarray, such as the Illumina Infinium MethylationEPIC BeadChip (850 K array), following the standard protocol provided by the manufacturer. ..



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